psRNATarget: a plant small RNA target analysis server

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psRNATarget: a plant small RNA target analysis server ...

psRNATarget: a plant small RNA target analysis server (2017 release) Nucleic Acids Res. 2018 Jul 2;46(W1):W49-W54. doi: 10.1093/nar/gky316. ... these regulatory sRNAs share the same mechanisms for post-translational gene silencing and translational inhibition. psRNATarget was developed to identify plant sRNA targets by (i) analyzing ...

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psRNATarget: a plant small RNA target analysis server

The psRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of small RNA/target site pairs that may affect small RNA binding activity to target transcript. The psRNATarget server is designed for high-throughput analysis of ...

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psRNATarget: a plant small RNA target analysis server ...

Jul 02, 2018  The analysis output page varies depending on the number of predicted miRNA–mRNA interactions in the new release. For output comprising of less than 100,000 miRNA-target in-silico interactions, the updated release of psRNATarget provides a paginated HTML table to display the analysis result. Users can also use the integrated search and sort functions to further filter the predicted miRNA ...

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psRNATarget: A Plant Small RNA Target Analysis Server ...

Upload sRNA file:[Load Demo Data] or paste sequences: - Upload limit: 25MiB, FASTA format or sequence only. Choose cDNA library: Allium cepa (Onion), unigene, DFCI Gene Index (ONGI), version 2,released on 2008_07_17. Allium cepa (Onion), unigene, DFCI Gene Index (ONGI), version 2,released on 2008_07_17. Amaranthus hypochondriacus (Prince-of ...

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psRNATarget: a plant small RNA target analysis server

The psRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of small RNA/target site pairs that may affect small RNA binding activity to target transcript. The psRNATarget server is designed for high-throughput analysis of ...

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psRNATarget: a plant small RNA target analysis server ...

May 27, 2011  This server incorporates recent discoveries in plant small RNA target recognition, e.g. it distinguishes translational inhibition and post-transcriptional inhibition ( 11), and it reports the number of small RNA/target site pairs that are reportedly associated with small RNA recognition activity to the target transcript. The psRNATarget is ...

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psRNATarget: a plant small RNA target analysis server ...

May 27, 2011  This server incorporates recent discoveries in plant small RNA target recognition, e.g. it distinguishes translational inhibition and post-transcriptional inhibition , and it reports the number of small RNA/target site pairs that are reportedly associated with small RNA recognition activity to the target transcript. The psRNATarget is designed ...

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(PDF) psRNATarget: A plant small RNA target analysis server

May 27, 2011  We present psRNATarget, a plant small RNA target analysis server, which features two important analysis functions: (i) reverse complementary matching between

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psRNATarget: A Plant Small RNA Target Analysis Server ...

psRNATarget: A Plant Small RNA Target Analysis Server (2017 Update) [Visit The Previous Version, 2011 Release]

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PX: psRNATarget; a plant small RNA target analysis server

BibTeX @ARTICLE{Dai_px:psrnatarget;, author = {Xinbin Dai and Patrick Xuechun Zhao}, title = {PX: psRNATarget; a plant small RNA target analysis server}, journal ...

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psRNATarget: a plant small RNA target analysis server ...

psRNATarget: a plant small RNA target analysis server (2017 release) Nucleic Acids Research ( IF 16.971) Pub Date : 2018-04-30, DOI: 10.1093/nar/gky316 Xinbin Dai,Zhaohong Zhuang,Patrick Xuechun Zhao Plant regulatory small RNAs (sRNAs), which include most microRNAs (miRNAs) and a subset of small interfering RNAs (siRNAs), such as the phased ...

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psRNATarget bio.tools

psRNATarget is a plant small RNA target analysis server which features reverse complementary matching between small RNA and target transcript, and target site accessibility evaluation. It is designed for high-throughput analysis of next generation data, and outputs a comprehensive list of small RNA-target pairs.

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Altmetric – psRNATarget: a plant small RNA target analysis ...

The psRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of small RNA/target site pairs that may affect small RNA binding activity to target transcript. The psRNATarget server is designed for high-throughput analysis of ...

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简便的植物小RNA分析神器psRNATARGET - 云+社区 - 腾讯云

May 08, 2019  Xinbin Dai, Zhaohong Zhuang and Patrick X. Zhao (2018). psRNATarget:a plant small RNA target analysis server (2017 release). Nucleic AcidsResearch. doi: 10.1093/nar/gky316. [PUBMED] Xinbin Dai and Patrick X. Zhao (2011). psRNATarget: a plant smallRNA target analysis server. Nucleic Acids Research 39(Web Server issue):W155-9.doi: 10.1093/nar/gkr319.

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The miR169n-NF-YA8 regulation module involved in drought ...

2 天前  The potential target genes corresponding to miR169n forms mentioned above were predicted using the target gene prediction tool psRNATarget ... psRNATarget: a plant small RNA target analysis server (2017 release) Nucleic Acids Res., 46 (2018), pp. W49-W54. View Record in Scopus Google Scholar

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miRNA分析--靶基因预测(三) - 斩毛毛 - 博客园

Jan 04, 2020  1、psRNATarget: A plant Samll RNA Target Analysis Server . 进去以后,提交自己miRNA文件,fasta格式,并且提交cds序列,按照默认参数进行预测即可. 2、TAPIR: target prediction for plant microRNAs. 同样提交miRNA 文件,以及cds序列,该在线工具序列数必须少于500条,若多余则分批提交

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IJMS Free Full-Text Uncovering miRNA-mRNA Regulatory ...

Plant small RNAs (sRNAs) are divided into two categories based on their precursor structures: microRNAs (miRNAs) and small interfering RNAs (siRNAs) . Plant miRNAs are composed of a class of sRNAs with a length of 20~24 nt, and these molecules target mRNAs via a seed region at positions 2~7 at the 5′ end [ 19 ].

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psRNATarget:一个植物小RNA靶分析服务器

The psRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of small RNA/target site pairs that may affect small RNA binding activity to target transcript. The psRNATarget server is designed for high-throughput analysis of ...

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psRNATarget: A Plant Small RNA Target Analysis Server ...

psRNATarget: A Plant Small RNA Target Analysis Server (2017 Update) [Visit The Previous Version, 2011 Release]

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psRNATarget: a plant small RNA target analysis server ...

psRNATarget: a plant small RNA target analysis server (2017 release) Nucleic Acids Research ( IF 16.971) Pub Date : 2018-04-30, DOI: 10.1093/nar/gky316 Xinbin Dai,Zhaohong Zhuang,Patrick Xuechun Zhao Plant regulatory small RNAs (sRNAs), which include most microRNAs (miRNAs) and a subset of small interfering RNAs (siRNAs), such as the phased ...

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Tools4miRs - psRNATarget

May 27, 2011  psRNATarget, a plant small RNA target analysis server, which features two important analysis functions: 1) reverse complementary matching between miRNA and target transcript using a proven scoring schema, and 2) target site accessibility evaluation by calculating unpaired energy (UPE) required to “open” secondary structure around miRNA’s target site on mRNA.

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psRNATarget – Plant small RNA Target Analysis Server – My ...

psRNATarget:: DESCRIPTION. psRNATarget is a plant small RNA target analysis server, which features two important analysis functions: 1) reverse complementary matching between miRNA and target transcript using a proven scoring schema, and 2) target site accessibility evaluation by calculating unpaired energy (UPE) required to “open” secondary structure around miRNA’s target site on mRNA.

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psRNATarget: a plant small RNA target analysis server - CORE

The psRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of small RNA/target site pairs that may affect small RNA binding activity to target transcript. The psRNATarget server is designed for high-throughput analysis of ...

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psRNATarget – My Biosoftware – Bioinformatics Softwares Blog

psRNATarget:: DESCRIPTION. psRNATarget is a plant small RNA target analysis server, which features two important analysis functions: 1) reverse complementary matching between miRNA and target transcript using a proven scoring schema, and 2) target site accessibility evaluation by calculating unpaired energy (UPE) required to “open” secondary structure around miRNA’s target site on mRNA.

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psRNATarget:一个植物小RNA靶分析服务器

The psRNATarget incorporates recent discoveries in plant miRNA target recognition, e.g. it distinguishes translational and post-transcriptional inhibition, and it reports the number of small RNA/target site pairs that may affect small RNA binding activity to target transcript. The psRNATarget server is designed for high-throughput analysis of ...

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miRNA分析--靶基因预测(三) - 斩毛毛 - 博客园

Jan 04, 2020  1、psRNATarget: A plant Samll RNA Target Analysis Server . 进去以后,提交自己miRNA文件,fasta格式,并且提交cds序列,按照默认参数进行预测即可. 2、TAPIR: target prediction for plant microRNAs. 同样提交miRNA 文件,以及cds序列,该在线工具序列数必须少于500条,若多余则分批提交

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‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide ...

Jul 16, 2012  Dai X, Zhao PX: psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res. 2011, 39: W155-159. 10.1093/nar/gkr319. CAS Article PubMed PubMed Central Google Scholar 16. Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP: Prediction of plant microRNA targets.

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The miR169n-NF-YA8 regulation module involved in drought ...

2 天前  The potential target genes corresponding to miR169n forms mentioned above were predicted using the target gene prediction tool psRNATarget ... psRNATarget: a plant small RNA target analysis server (2017 release) Nucleic Acids Res., 46 (2018), pp. W49-W54. View Record in Scopus Google Scholar

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IJMS Free Full-Text Uncovering miRNA-mRNA Regulatory ...

Plant small RNAs (sRNAs) are divided into two categories based on their precursor structures: microRNAs (miRNAs) and small interfering RNAs (siRNAs) . Plant miRNAs are composed of a class of sRNAs with a length of 20~24 nt, and these molecules target mRNAs via a seed region at positions 2~7 at the 5′ end [ 19 ].

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TarDB: an online database for plant miRNA targets and ...

May 13, 2021  Wu HJ, Ma YK, Chen T, Wang M, Wang XJ. PsRobot: a web-based plant small RNA meta-analysis toolbox. Nucleic Acids Res. 2012;40(Web Server issue):W22–8. CAS Article Google Scholar 17. Dai X, Zhuang Z, Zhao PX. psRNATarget: a plant small RNA target analysis server (2017 release). Nucleic Acids Res. 2018;46(W1):W49–54.

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Potential treatment for chronic myeloid leukemia using ...

May 01, 2021  The present study predicted plant miRNAs by using the psRNATarget. psRNATarget is a platform that was developed to identify plant small RNA (sRNA) targets by analyzing complementary matching between sRNA and target mRNA sequences.

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‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide ...

Jul 16, 2012  Results. Putative 41,965 genome wide miRNA target sites and 10,442 miRNA target genes were identified in the A. thaliana genome. Taken together with genes targeted by small RNAs from small RNA transcriptome datasets, a total of 16,600 A. thaliana genes are putatively regulated by inhibitory RNAs. A novel web-tool, ‘MicroRNA Targets’, was integrated into AthaMap which permits the ...

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